PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023742-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 717aa    MW: 77843.4 Da    PI: 7.9964
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023742-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.43.1e-312744612131
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       +g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+ G+d++sk+++WL+++a  ai++l+ ++++ +s++  ++++ +s++  ss+     
  PSME_00023742-RA 274 TGGKDRHSKVRTAKGLRDRRVRLSVSTAIQFYDLQDRIGLDQPSKAVDWLMNAARSAIDDLPALDAEMPSASaGNVTQMNSSD--SSHlmhyv 364
                       689*************************************************************5555544432222222222..22233555 PP

               TCP  89 ......................................................kaaksaakskksqksaasalnlak.esrakarararert 126
                                                                             ++++s+  s k +++ +s+ +++k + + +ar +arer 
  PSME_00023742-RA 365 vspresataaaasvftafgyglgspkaqetnshnaingmaisiktlkesdlgrsNSSTSD-GSVKGSAEYTSNCSISKpDPNIEARFKARERA 456
                       666666666666777777777777777777777778888888888888888864222222.33333444444455555566666666666666 PP

               TCP 127 rekmr 131
                        +k +
  PSME_00023742-RA 457 GKKSA 461
                       65554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-33275462IPR005333Transcription factor, TCP
PROSITE profilePS5136931.268276334IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MAGGFAFSSV PWYTTNAAKS LGNVGLGPEA LSSRSNCSLK CNCKAGFEAF TDRSKCAALR  60
YSENDSSGAE VRRYCEALSS YPAGDQLAKS SNNCTTDTLL AAFKASNCTG PCVCCQEQKP  120
GLDANVTATS RQTLPNATLQ SANDQRICPK YRRELKTTNS THEISLEFKP GGINDAYSHN  180
MLSKSSEDSE AVRAAKVEIY SKDLAAFSES INECVLQEEY ASGRQNHDDN KIQEISKGSK  240
RKAREMERKT VAVEIQSARN VDLEARIVRV SRLTGGKDRH SKVRTAKGLR DRRVRLSVST  300
AIQFYDLQDR IGLDQPSKAV DWLMNAARSA IDDLPALDAE MPSASAGNVT QMNSSDSSHL  360
MHYVVSPRES ATAAAASVFT AFGYGLGSPK AQETNSHNAI NGMAISIKTL KESDLGRSNS  420
STSDGSVKGS AEYTSNCSIS KPDPNIEARF KARERAGKKS ASAKNSGSSP PAIHQLNLIQ  480
PSLSSMSQSV LPYTTLPLEF QQSSKDDNSC GIQSEVLTGT GSVQQLWDYN TPSCTEIICT  540
QDSHPLQNMA SSSTEALQKS FQPVQNTSSV HAVLGSSCLQ SYEMEDSAIP IFEPNQNRHL  600
ETNAVQGQAN LLYSNIPIFV KNVEQQQQQQ AQTHFKYFES KAVPTFFNDI NFSTSSLSSR  660
GPLQSNSSSI KNMPSISKTR RNAYGEASIK AAHFFPFQGY DSHTVFPANH DAGQRKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.26e-33TCP family protein